Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M16 RNAprocessing Mitochondrion_UniqueNum	BreastC_M16 RNAprocessing Mitochondrion_pVal	BreastC_M16 RNAprocessing Mitochondrion_Unique	BreastC_M10 Chr22q11-13_UniqueNum	BreastC_M10 Chr22q11-13_pVal	BreastC_M10 Chr22q11-13_Unique
GCCATNTTG_YY1_Q6	0		0.000715705815978	42	0.000601718603726	AGPAT1|AP3D1|CNOT3|DYRK1B|EIF2B4|FBXL18|FKRP|GBF1|IDH3G|ILF3|IRAK1|LYPLA2|MRPL11|NCDN|NDUFB11|NFYA|NFYC|NUDT3|PCIF1|PRICKLE3|PRKCSH|RBM10|RNF5|RPN1|RPS8|RXRB|SAFB|SLC39A7|SMYD5|STRN4|SZRD1|TJAP1|U2AF2|UBA1|UBE2J2|UBIAD1|UBXN11|WDR13|WIPI2|YBX1|ZNF335|ZNF668	13	0.00082969302823	ATF4|BCL2L13|CLPB|CRKL|DGCR2|EP300|HIC2|HMGXB4|L3MBTL2|MTMR3|PICK1|SF3A1|TUG1
GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	0		4.15777799722e-07	84	1.75644583924e-31	ABCC10|ABCF3|AGRN|APBA3|ARMC6|ATAD3B|ATAT1|ATN1|BICRA|C7ORF26|CALR|CC2D1B|CIC|CNOT3|CSNK1G2|CSNK2B|CUL7|DMWD|DOT1L|DXO|EHMT2|EIF3B|EPN1|EVI5L|FBXL18|FBXL19|FBXO46|FURIN|GATAD2A|GTF2H4|HCFC1|HHLA3|HIP1R|ILF3|INTS1|KHSRP|KLF16|KMT2B|LEMD2|LLGL1|MAP2K2|MBD3|MIIP|MOGS|MTOR|MYO9B|NEURL4|NFKBIL1|NPM3|PBX2|PPARD|PPP1R12C|PPRC1|PQBP1|PRRC2A|QTRT1|RANBP3|RAP1GAP2|RBM10|RBM14|SBNO2|SCAF1|SETD5|SLC39A3|SMARCA4|SMARCD1|SMG9|SPPL2B|SRRT|SUV39H1|TBC1D22B|TECPR1|TMEM201|TMEM259|TNPO2|U2AF2|UQCC2|VARS|XPO5|ZMIZ2|ZNF358|ZNF444|ZNF524|ZNF580	16	8.31555599444e-07	APBA1|BRD1|DEPDC5|GRAMD4|HIRA|L3MBTL2|LIMK2|MAPK11|MICALL1|PHF5A|PICK1|POLR2F|RANGAP1|SGSM3|TRABD|TRMU
GSE369_PRE_VS_POST_IL6_INJECTION_SOCS3_KO_LIVER_DN	0		9.594083937e-06	37	1.12369119854e-09	AGRN|BAG6|BSG|BTBD2|CLPTM1|DAP|DGKZ|EIF2B5|ENTPD6|EPHX1|FAM3A|GBF1|GCDH|HADHA|LSM2|LTBR|MAP2K2|MEA1|MLF2|MYO9B|NUCB1|PIP5K1C|PLD2|PRKCSH|RAB11B|SH3GL1|SORBS3|SUPT5H|TECR|TFE3|TMEM259|TRAPPC6A|TRIM28|VPS52|WBP2|ZBTB48|ZNF428	11	1.91870441828e-05	ARSA|ASCC2|GRAMD4|HIRA|LZTR1|PPIL2|RANGAP1|RHBDD3|SF3A1|SLC25A1|TXN2
GSE45837_WT_VS_GFI1_KO_PDC_DN	0		3.6196744883e-05	37	3.30265466916e-10	AUP1|BCS1L|C7ORF26|CLPTM1|COX6B1|DDX49|DFFB|DMAC2|DNPH1|ECSIT|ETHE1|GNA12|HMGN2|HSD17B10|LSM7|NDUFA7|NDUFB11|NDUFS7|NPM3|NUDT1|PARL|PBX2|PIN1|PLEKHJ1|POLR2I|PRPF31|PSMD8|RFXANK|SAE1|SLC35C1|SNRPD2|TFPT|TOE1|TRMT5|UBL5|UQCR11|ZNF428	10	7.23931595006e-05	ADSL|HDHD5|MRPL40|NIPSNAP1|POLR2F|SPECC1L|SUN2|TCF20|UQCR10|XRCC6
Human Lung_Chitale09_103genes (19525976-SuppTable5b)	0		0.000128398343545	20	2.47064658795e-08	AURKAIP1|CDK11A|CTAG2|CYTH2|FBXL18|FKBPL|HMGN2|INTS1|MED18|MGAT5|MRM2|MRPL2|NUDC|OGDH|PARK7|PEX10|PIK3R2|PRKCSH|RER1|WRAP73	6	0.000256771980625	FAHD2A|FOXRED2|LDLR|MAFF|PPIL2|SNRPD3
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN	0		8.94198984271e-05	90	7.59943024201e-07	AKT2|ALG3|ALKBH2|ARHGDIA|ATAD3A|ATAD3B|ATG7|AURKAIP1|BAHCC1|BDH1|C7ORF50|C19ORF70|C20ORF27|CALR|CCDC86|CCDC124|CLPTM1|CLTB|CLUH|CORO7|DFFB|DLX4|DNAAF5|DNAJB1|DNAJC11|DOHH|DUS3L|EBP|ECE2|EHD1|EIF3B|ELOF1|FARSA|FKBP4|GADD45GIP1|GJA3|GRWD1|HAUS7|HSPBP1|ILF3|LSM7|MOGS|MRPL4|MRPL14|MRPL21|MRPS12|MRTO4|NAA10|NDUFA11|NDUFB7|NHP2|NOC2L|NOP16|NUDC|PFDN6|POLR1C|POLR2E|POLR2H|PPAN|PRADC1|PRKACA|PRMT2|PRPF31|PRR7|RGS14|RNF126|RPS6KA4|RRP1|RRP12|S100A11|SCLY|SFXN4|SLC29A1|SRM|SRRT|SSBP3|TEX261|TIMM13|TMEM147|TMEM201|TNPO2|UBIAD1|UBL5|UQCC3|VARS|WDR46|WDR74|XPO5|ZNF574|ZNF593	23	0.00017807985383	BCR|EWSR1|FOXRED2|GCAT|GRAMD4|HDHD5|L3MBTL2|MCAT|MIF|MTFP1|PES1|POLR2F|POLR3H|PRR5|RANGAP1|RRP7A|SNU13|SYNGR1|TOMM22|TRMU|TTLL12|ZNF74|ZNRF3
KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN	0		2.26951615685e-05	108	6.22566831847e-10	AKT2|ALG3|ALKBH2|ARHGDIA|ATAD3A|ATAD3B|ATG7|AURKAIP1|BAHCC1|BDH1|BYSL|C7ORF50|C19ORF24|C19ORF70|C20ORF27|CALR|CCDC86|CCDC124|CD320|CLPTM1|CLTB|CLUH|CORO7|DFFB|DLX4|DNAAF5|DNAJB1|DNAJC11|DOHH|DUS3L|EBP|ECE2|EIF3B|ELOF1|EXOSC5|FARSA|FKBP4|FTSJ1|FZR1|GADD45GIP1|GJA3|GRWD1|HAUS7|HSPBP1|ILF3|ISOC2|KHSRP|LSM7|MOGS|MRPL4|MRPL14|MRPL21|MRPS12|MRPS25|MRTO4|NAA10|NCLN|NDUFA11|NDUFB7|NHP2|NOC2L|NOP16|NPM3|NUDC|PDCD2L|PFDN6|POLR1C|POLR2E|POLR2H|PPAN|PRADC1|PRKACA|PRPF31|PRR7|PWP2|QTRT1|RIOK1|RNF126|RPS6KA4|RRP1|RRP12|RUVBL2|SCLY|SFXN4|SLC29A1|SLC39A3|SMARCD1|SMURF1|SRM|SRRT|SSBP3|SUPV3L1|TEX261|THOP1|TIMM13|TMEM147|TMEM201|TNPO2|TRMT5|UBIAD1|UBL5|UQCC3|VARS|WDR46|WDR74|XPO5|ZNF574|ZNF593	26	4.53897005702e-05	BCR|CLPB|EWSR1|FAM118A|FOXRED2|GCAT|GRAMD4|HDHD5|L3MBTL2|MCAT|MIF|MTFP1|PARVB|PES1|POLR2F|POLR3H|PRR5|RANGAP1|RRP7A|SNU13|SYNGR1|TOMM22|TRMU|TTLL12|ZNF74|ZNRF3
LU_EZH2_TARGETS_UP	0		4.98643304878e-05	33	9.71515741498e-05	ALKBH2|BOK|C21ORF33|CGB8|CSK|CUTA|ELFN2|FLOT1|GNA11|HDAC1|HES4|ISOC2|JOSD2|KLHDC3|KLHL35|LONP1|LSM7|MEX3D|NUDT1|PCNX3|PFDN6|PFKL|PIH1D1|PLEKHJ1|PUSL1|RPL36|SNCG|TRAPPC5|TRAPPC12|TSPAN17|TYSND1|WDR74|WDR83	14	2.57708682571e-06	ACO2|BIK|CBY1|CRYBB2|GUCD1|MAPK11|PDXP|PHF5A|RPS19BP1|TCF20|TOMM22|TRIOBP|UQCR10|ZMAT5
MODULE_350	0		0.000529054098543	11	0.000577811778886	APBA3|BAG6|CLPTM1|DXO|MRPL4|MRPS12|NR1H2|NUCB1|POLR2E|RNF126|TRIM27	5	0.000480296418199	ARSA|EWSR1|FAHD2A|RHBDD3|SBF1
MOOTHA_HUMAN_MITODB_6_2002	0		0.000465442155801	51	1.14358462633e-06	BAK1|BAX|BCKDHA|BCS1L|BDH1|CLPP|COX6B1|CPT1A|DNASE2|FARS2|FARSA|GAL3ST1|GALR3|GCDH|GPX4|HADHA|HLCS|HPS1|HSPA1A|HSPA1L|IDH3G|LONP1|LYPLA2|MBD3|MFN2|MRPL2|MRPL4|MRPL11|MRPL20|MRPL34|MRPS12|MRPS18A|MRPS18B|MTCH1|MTOR|NDUFA3|NDUFA7|NDUFB7|NDUFS7|OGDH|PDK3|POLRMT|RAF1|SBNO2|SUPV3L1|TBCB|TIMM13|TIMM17B|TIMM44|UQCR11|UROS	13	0.000929740726976	ACO2|CYP27B1|GCAT|LMF2|MPST|NDUFA6|SLC25A1|SLC25A17|TOMM22|TSPO|TST|TXN2|TXNRD2
MOOTHA_MITOCHONDRIA	0		0.000242375647619	45	0.000343631787337	BAK1|BAX|BCKDHA|BCS1L|BDH1|CAD|COX6B1|CPT1A|DNASE2|FAM3A|FARS2|FARSA|GCDH|GPX4|HADHA|HPS1|HTRA2|LONP1|LYPLA2|MBD3|MFN2|MRPL2|MRPL4|MRPL11|MRPL20|MRPL34|MRPS12|MRPS18A|MRPS18B|MTCH1|NDUFA3|NDUFA7|NDUFB7|PDK3|POLRMT|PYGB|RAF1|SBNO2|SLC25A23|SUPV3L1|TBCB|TIMM13|TIMM17B|TIMM44|UQCR11	15	0.000141119507901	ACO2|BIK|CYP27B1|LMF2|MB|MCAT|MPST|NDUFA6|SLC25A1|SLC25A17|TOMM22|TSPO|TST|TXN2|TXNRD2
MOOTHA_PGC	0		0.000146956861827	50	2.78260714341e-06	ABCF1|ACOT13|AES|AGPAT3|AK1|APBA3|ATN1|AURKAIP1|BAG6|BSG|CDC34|CLPP|CPT1A|DFFA|DXO|EIF2AK1|FARS2|GCDH|GPX4|GTF2H4|GTPBP2|GYS1|HSD17B10|HSPBP1|IDH3G|LONP1|LRP5|MRPL4|MRPL11|MRPL20|MRPL34|MRPS12|MRPS18A|MRPS18B|MTOR|NFYC|PGLS|POLR2E|PRDX2|RAB11FIP5|RNF5|RUVBL2|RXRB|SGTA|SKIV2L|SPSB2|SUPV3L1|TBRG4|TIMM13|TIMM44	14	0.00029113111651	ACO2|ADSL|COMT|EEF1AKMT3|ID2|LRP5L|MRPL40|NDUFA6|PKM|PMM1|POLR2F|RANGAP1|TXN2|UQCR10
mitochondrial envelope [GoID:GO:0005740; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		3.05050319405e-05	78	2.37894525008e-07	AIFM2|APOO|ATAD3A|ATAD3B|ATP5D|AURKAIP1|BAK1|BAX|BCS1L|BDH1|BOK|BPHL|C19ORF70|CHCHD4|CHCHD6|CMC4|COQ8B|COX6B1|CPT1A|DMAC2|DMPK|DNAJC11|DNM2|ECSIT|FATE1|FKBP8|HADHA|HTRA2|MAPK8IP1|MCUR1|MFN2|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25|MTCH1|MTOR|MUL1|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFB7|NDUFB11|NDUFS7|NDUFV3|OGDH|PARK7|PARL|PINK1|PRELID1|QTRT1|RAB11FIP5|RAF1|RNF5|SFXN4|SIRT5|SLC25A23|TAMM41|TAZ|THOP1|TIMM13|TIMM17B|TIMM29|TIMM44|TOMM6|UBIAD1|UQCC2|UQCC3|UQCR11	21	6.0772169356e-05	AIFM3|BCL2L13|BIK|CHCHD10|CYP27B1|GCAT|GRAMD4|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|UQCR10
mitochondrial membrane [GoID:GO:0031966; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		4.07030475046e-05	74	3.98412445244e-07	AIFM2|APOO|ATAD3A|ATAD3B|ATP5D|AURKAIP1|BAK1|BAX|BCS1L|BDH1|BOK|BPHL|C19ORF70|CHCHD6|COQ8B|COX6B1|CPT1A|DMAC2|DMPK|DNAJC11|DNM2|ECSIT|FATE1|FKBP8|HADHA|HTRA2|MAPK8IP1|MCUR1|MFN2|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25|MTCH1|MTOR|MUL1|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFB7|NDUFB11|NDUFS7|NDUFV3|OGDH|PARK7|PARL|PINK1|QTRT1|RAB11FIP5|RAF1|RNF5|SFXN4|SIRT5|SLC25A23|TAMM41|TAZ|TIMM13|TIMM17B|TIMM29|TIMM44|TOMM6|UBIAD1|UQCC2|UQCC3|UQCR11	20	8.10076825639e-05	AIFM3|BCL2L13|BIK|CYP27B1|GCAT|GRAMD4|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|UQCR10
mitochondrial part [GoID:GO:0044429; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		5.99555460723e-05	100	1.4051957164e-07	AIFM2|ALKBH7|APOO|ATAD3A|ATAD3B|ATG4D|ATP5D|AURKAIP1|BAK1|BAX|BCKDHA|BCS1L|BDH1|BOK|BPHL|C19ORF70|CHCHD4|CHCHD6|CLPP|CMC4|COQ8B|COX6B1|CPT1A|DMAC2|DMPK|DNAJC11|DNM2|ECSIT|ETHE1|FARS2|FATE1|FDX1L|FKBP8|GADD45GIP1|GCDH|HADHA|HSD17B10|HTRA2|IDH3G|LONP1|LYRM4|MAPK8IP1|MCUR1|MFN2|MRM2|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25|MTCH1|MTOR|MUL1|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFB7|NDUFB11|NDUFS7|NDUFV3|NUDT1|OGDH|PARK7|PARL|PDK3|PINK1|POLRMT|PRELID1|QTRT1|RAB11FIP5|RAF1|RNF5|RPUSD3|SFXN4|SIRT5|SLC25A23|SUPV3L1|TAMM41|TAZ|TBRG4|THOP1|TIMM13|TIMM17B|TIMM29|TIMM44|TOMM6|TRMT5|TWNK|UBIAD1|UQCC2|UQCC3|UQCR11	25	0.000119770572573	ACO2|AIFM3|BCL2L13|BIK|CHCHD10|CYP27B1|GCAT|GRAMD4|MCAT|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|TXN2|TXNRD2|UQCR10
mitochondrial transport [GoID:GO:0006839; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000271990872013	35	0.000310401879541	ALKBH7|ATP5D|BAK1|BAX|BOK|CHCHD4|CPT1A|GSK3B|HIP1R|HSPA1A|HSPA1L|HTRA2|MCUR1|MFN2|MID1IP1|MUL1|NDUFA13|PARL|PINK1|POLR3A|PSMD8|SAE1|SLC9A1|SLC25A23|STPG1|TIMM13|TIMM17B|TIMM29|TIMM44|U2AF1|U2AF2|UBE2J2|UBL5|WDR46|ZBTB17	12	0.000233579864484	HPS4|RTL10|SAMM50|SLC25A1|SLC25A17|SMDT1|SREBF2|TOMM22|TSPO|TST|UBE2L3|ZDHHC8
